
Connect line in of your sound
card to
line out.It is not required that the response is approximately at 0 dB as long as the result is smooth.
Connect left line in of your sound card to
left line out and right line in to ground.
Connect right line in of your
sound card to
right line out and left line in to ground.
Connect left and right line in
of your
sound card to
left line out. 
Input
overdriveIf you do not get reasonable results in step 5, especially if the green and pink graph in the frequency response are noisy and graphs on the right show high and irregular values, then it is likely that you overdrive your line input.
Reduce the volume and repeat from step 5.
Equalizer
enabledIf the frequency response is irregular but well reproducible (does not change with longer measurements) then most likely you have REALEQ or some other equalizer plug-in still enabled.
Disable all equalizers and other sound enhancement plug-ins except for DCR123 unless you want DRC123 to compensate for the effect of them. ;-)

Different
Sound
deviceIf the response decreases at higher frequencies with measurement time then you used another sound card for playback and recording. This causes the the frequencies of the test signal to be slightly shifted because of tolerances of the crystal oscillators of the sound devices.
DRC123 is not designed to work with frequency shifts because this would significantly decrease the accuracy of the results. DRC123 relies on several symmetries of the setup to get high precision results from cheap, uncalibrated hardware. The exact frequency is one of them. So it is essential to use the same device for recording and playback. This also implies that USB measurement microphones are unusable (i.e. Behringer ECM 8000) because they cannot support a synchronous playback channel.